I have created a black jack app and have got it show both cards but I only want it to show the second card in the hand and keep the first one hidden until its time to show. Here is the code

    package blackjack;
    import java.util.Scanner;

     /*
            This program is a program that lets up to 4 users plus a dealer
            play a game of black jack or otherwise known as 21.
             */

    public class BlackJack
    {

            static Player[] players = new Player[4];
            static int numberOfPlayer;
            static Player dealer  = new Player("Dealer");
            static Deck deck = new Deck();   // An array of 52 Cards, representing the deck.
            static int numberOfCardsUsed = 0;
            static int currentPosition; // Current position in the deck

                public static void main(String[] args)
            {
                 deck.CreateNewDeck();
                //deck.DisplayDeck();
                deck.ShuffleCards();
                //deck.DisplayDeck();

                Scanner sc = new Scanner(System.in);

                System.out.printf("\n  Enter total number of players   ");
                numberOfPlayer = sc.nextInt();

                for(int i = 0; i < numberOfPlayer; i++)
                {
                    String userName;

                    System.out.printf("\n\n  Enter name of Player "+Integer.toString(i + 1)+" : ");
                    sc = new Scanner(System.in);
                    userName = sc.nextLine();

                    players[i] = new Player(userName);

                    GivePlayerACard(players[i],deck.getCard(numberOfCardsUsed));

                }

                GivePlayerACard(dealer,deck.getCard(numberOfCardsUsed));
                DisplayTable();

                System.out.println("\n\n\nGive second card to each user");
                for(int i = 0; i < numberOfPlayer; i++)
                {

                GivePlayerACard(players[i],deck.getCard(numberOfCardsUsed));

                }

                GivePlayerACard(dealer,deck.getCard(numberOfCardsUsed));
                DisplayTable();

          for(int i = 0; i < numberOfPlayer; i++)
                {
                    do
                    {
                        int choice;
                        System.out.println("\n\n Player "+ Integer.toString(i + 1) + " choose your option");
                        System.out.println("1 -> Hit");
                        System.out.println("2 -> Stand");
                        System.out.println("3 -> Split");
                        System.out.println("4 -> Double-Down");
                        System.out.println("5 -> Surrender");

                        choice = sc.nextInt();
                        if(choice==1)
                        {
                          GivePlayerACard(players[i],deck.getCard(numberOfCardsUsed)); 
                          if(players[i].IsPlayerBust())
                          {
                              System.out.println(" \n\n Player "+ Integer.toString(i + 1) + " is Bust");
                              break;
                          }
                        }
                        else if(choice==2)
                        {
                           break; 
                        }
                        else if(choice==3)
                        {
                            System.out.println("\n\n Player "+ Integer.toString(i + 1) + " Sorry, Not in this program");

                        }
                        else if(choice==4)
                        {
                            System.out.println("\n\n Player "+ Integer.toString(i + 1) + " Sorry, Not in this program");
                        }
                        else if(choice==5)
                        {

                             System.out.println("\n\n Player "+ Integer.toString(i + 1) + " Sorry, Not in this program");
                        }
                    } while(true);

                }

            }  // end playBlackjack()

             public static void DisplayTable()
            {
                for(int i = 0; i < numberOfPlayer; i++)
                {

                    players[i].DisplayPlayer();

                }

                dealer.DisplayPlayer();
            }

            public static void GivePlayerACard(Player player,Card card)
            {
                    player.Cards[player.numberOfCards] = deck.getCard(numberOfCardsUsed);
                    player.numberOfCards += 1;
                    numberOfCardsUsed +=1;
            }

        }

        Here is the Player Class 

        package blackjack;

        public class Player 
        {
            public String Name;
            public Card[] Cards;
            public int numberOfCards;
            public int wins;
            public int loss;
            public int ties;
            public int currentTotal;
            public int total;

            public Player(String name)
            {
                Name = name;
                Cards = new Card[100];
                numberOfCards = 0;
            }

            public void DisplayPlayer()
            {
                System.out.println("Player Name:" + Name );
                System.out.println("  Current Card List");
                for(int i =0 ; i < numberOfCards; i++)
                {
                    Cards[i].display();
                }
            }

            public boolean IsPlayerBust()
            {
                int total=0;
                for(int i = 0 ; i < numberOfCards; i++)
                {
                    int value = Cards[i].getValue();

                    if(value>10)
                    {               
                        total += 10;

                    }
                    else
                    {
                        total += value;
                    }
                }

                return total>21;
            }

            public int GetcurrentTotal()
            {

              return currentTotal;
            }
            public void setCurrentTotal(int currentTotal)
            {
                this.currentTotal = currentTotal;
            }

        }

        Here is the Card class

        package blackjack;

        public class Card 
        {

            private String valueString;
            private int value;
            private int suit;
            private String suitString;

            public Card(int number, int shape)
            {
                value = number;
                suit = shape;
                if(value == 1)
                {
                    valueString = "Ace";
                }
                else if(value == 11)
                {
                    valueString = "Jack";
                }
                else if(value == 12)
                {
                    valueString = "Queen";
                }
                else if(value == 13)
                {
                    valueString = "King";
                }
                else
                {
                    valueString = Integer.toString(value);
                }

                switch(shape)
                {
                    case 1:
                        suitString = "Spades";
                        break;
                    case 2:
                        suitString = "Hearts";
                        break;
                    case 3:
                        suitString = "Clubs";
                        break;
                    case 4:
                        suitString = "Diamonds";
                        break;
                }

            }

            public int getValue() 
            {
                return value;
            }

            public void setValue(int value) 
            {
                this.value = value;
            }
            public int getSuit() 
            {
                return suit;
            }
            public void setSuit(int suit) 
            {
                this.suit = suit;
            }

            public void display()
            {
                System.out.println("    "+valueString + " of "+ suitString);
            }

        }

        Here is the Deck Class

        package blackjack;
        import java.util.*;

        public class Deck {
            private Card[] deck;

            public void CreateNewDeck()
            {            int index = 0;
                deck = new Card[52];
                for(int i = 1; i <= 13; i++)
                {
                    for(int j = 1; j <= 4 ; j++)
                    {

                        deck[index] = new Card(i,j);
                        index = index + 1;
                    }
                }

            }

            public void DisplayDeck()
            {
                for(int i = 0 ; i< 52; i++)
                {
                    deck[i].display();
                }
            }

            public Card getCard(int index)
            {
                return deck[index];
            }

            public void ShuffleCards()
            {
                int index;

                Random random = new Random();
                for (int i = deck.length - 1; i > 0; i--)
                {
                    index = random.nextInt(i + 1);
                    if (index != i)
                    {
                        Card tempCard = new Card(deck[i].getValue(),deck[i].getSuit());
                        deck[i] = new Card(deck[index].getValue(),deck[index].getSuit());
                        deck[index] = new Card(tempCard.getValue(),tempCard.getSuit());
                    }
                }

            }

            }

You could add a boolean parameter to Player:: displayPlayer to control whether the first card should be displayed or not.

ps: Immutable classes are a good thing!
You have setters in Card for value and suit, probably because that's a thing people do without thinking. In this case it's a mistake because:
Classes like that can be / should be immutable to eliminate a whole raft of possible errors and,
If you do call those methods then valueString or suitString will be wrong.

Far better to delete those methods and declare all the variables in Card as final. Then you can also make them public and get rid of the getters as well.

How would I add that boolean?

Something like (pseudo-code)

void display(boolean showFirstCard) {
     ...
     if (showFirstCard)  {
           show first card
     }
     show remaining cards
 }
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