Note: C:\Users\Hamza\Desktop\Graph.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.

Tool completed successfully

import java.io.InputStream;
import java.net.URL;

import java.util.*;
import java.awt.*;
import java.applet.Applet;
class Node {
    double x;
    double y;
    int lane;
    int road;
    double dx;
    double dy;
    String lbl;
    int carW;
    int carL;
    double carWaiting;
}

class ChangeLight implements Runnable {
    int signal;
    int pauss, redpauss, greenpauss;
    Thread lighter;

    ChangeLight(){
       signal=1;
       redpauss=6000;
       greenpauss=6000;
   }

public void run() {
              signal=1;
	while (true) {
	    if (signal==1){
                      signal=0;
                      pauss=greenpauss;
                  }
                  else {
                      signal=1;
                      pauss=redpauss;
                  }
	    try {
		Thread.sleep(pauss);
	    } catch (InterruptedException e) {
		break;
	    }
	}
    }
    public void start() {
	lighter = new Thread(this);
	lighter.start();
    }
    public void stop() {
	lighter.stop();
    }
}

class CalFlow implements Runnable {
    int carnum, count;
    double carwt;
    int pauss;
    double time0, time1, timelap;
    double carflow[] = new double[40];

    Thread flow;

    CalFlow(){
      carnum=0;
      carwt=0;
      pauss=2000;
      time0=0;
      time1=0;
      for (int k=0; k<40; k++)
         carflow[k]=0;
      count=0;
   }

    public void run() {
	while (true) {
                 time1= System.currentTimeMillis();
                 timelap=time1-time0;
                 if (timelap >50)
	     carflow[count]= ((double)(carnum)/timelap)*1000;
                 count=(count+1)%40;

	    try {
		Thread.sleep(pauss);
	    } catch (InterruptedException e) {
		break;
	    }
	}
    }
    public void start() {
	flow = new Thread(this);
	flow.start();
    }
    public void stop() {
	flow.stop();
    }
}


class GraphPanel extends Applet implements Runnable {
    Graph graph;
    int nnodes;
    int lghtOrStp;
    Node nodes[] = new Node[100];
    ChangeLight  light[] = new ChangeLight[5];
    CalFlow carpermin[] = new CalFlow[5];
    Thread relaxer, flow;
    int brgflag[] = new int[5];
    double speed=10;
    int carwidth=6, carlength=9;
    int xpos[]= new int[5];
    int ypos=200;
    int brgright[] = new int[5];
    int brgleft[] = new int[5];
    int brgtop =ypos+ carlength;
    int brgbottom=ypos- carlength;
    int rdleft[]=new int[5];
    int rdright[] = new int[5];
    int rdtop= ypos+ carwidth, rdbottom= ypos- carwidth;

    GraphPanel(Graph graph) {


              lghtOrStp=1;                                    //stop :0, light: 1
	this.graph = graph;
              for (int i=0; i<5; i++)
              {
               light[i]= new ChangeLight();
               carpermin[i]= new CalFlow();

               xpos[i]=150*(i+1);
               brgright[i]=xpos[i]- carlength;
               brgleft[i]=xpos[i]+ carlength;
               brgflag[i]=0;
                }
               for(int k=1; k<4; k++){
                  rdleft[k]= xpos[k-1]- carwidth;
                  rdright[k]= xpos[k-1]+ carwidth;
               }
              rdleft[0]=0;
              rdright[0]=0;
      }

    int findNode(String lbl) {
	for (int i = 0 ; i < nnodes ; i++) {
	    if (nodes[i].lbl.equals(lbl)) {
		return i;
	    }
	}
	return addNode(lbl);
    }
    int addNode(String lbl) {
               int temp;
	 Node n = new Node();
               temp = (int)(5*Math.random());
               if (temp==0||temp==4){
                     n.x = 480 + 210*Math.random();
                     n.y= ypos;
                     n.carW=carlength;
                     n.carL=carwidth;
                }
               else{
                     n.x= xpos[temp-1];
                     n.y= 10+100*Math.random();
                     n.carW=carwidth;
                     n.carL=carlength;
                }
//              temp=(int)(3*Math.random());                   // three lanes
//	    n.y = 150+50*temp;
               if (temp==4)
                   temp=0;
               n.road=temp;
 	 n.lbl = lbl;
               n.carWaiting=-1;
	 nodes[nnodes] = n;
	 return nnodes++;
    }

public void run() {
              for (int j=0; j<5; j++)
                  light[j].signal=1;

              flow = new Thread(carpermin[0]);
              carpermin[0].time0 = System.currentTimeMillis();
              carpermin[0].carnum=0;
              flow.start();
	while (true) {
	    relax();
	    try {
		Thread.sleep(50);
	    } catch (InterruptedException e) {
		break;
	    }
	}
    }

    synchronized void relax() {
	for (int i = 0 ; i < nnodes; i++) {
                  if (nodes[i].road==0){
                    nodes[i].dx = -speed*Math.random();
	      nodes[i].dy = 2*Math.random()-1;
                   }
                  else{
                    nodes[i].dy = speed*Math.random();
	      nodes[i].dx = 2*Math.random()-1;
                  }
	}
	for (int i = 0 ; i < nnodes ; i++) {
	    Node n1 = nodes[i];
	    double dx = 0;
	    double dy = 0;
	    for (int j = 0 ; j < nnodes ; j++) {
                            Node n2 = nodes[j];
		if (i == j||n1.road!=n2.road) {
		    continue;
		}
                            double vx;
		if(n1.road==0)
		    vx = n1.x - n2.x;
                            else
                                vx= n2.y-n1.y;
                            if (vx<0)
                                 continue;
                            double len=vx;

                            if( len<(n2.carW+n2.carL)){
                                if (n1.carWaiting<0)
                                  n1.carWaiting= System.currentTimeMillis();

                                 if(n1.road==0)
                                      n1.dx=0;
                                 else
                                      n1.dy=0;
                              }
	    }

	}
//move a car
	 Dimension d = size();
               double temp;
              	 for (int i = 0 ; i < nnodes ; i++) {
	        Node n = nodes[i];
                       if(n.road==0){
                          temp=n.x;
	            n.x += Math.max(-10, Math.min(10, n.dx));
                          for (int k=0; k<3; k++){
                              if ((n.x<brgleft[k]&&n.x>brgright[k])&&brgflag[k]==1){
                                if(temp> brgleft[k] ||temp<brgright[k])
                                    n.x=temp;
                              }
                             else if ((n.x< brgleft[k] &&n.x>brgright[k])&&brgflag[k]==0)
                                if (lghtOrStp==0)
                                    brgflag[k]=1;
                                else{
                                    if (light[k].signal==0)
                                        brgflag[k]=1;
                                    else
                                        n.x=temp;
                                }
                             else if(temp< brgleft[k] &&temp>brgright[k])
                                 brgflag[k]=0;
		if (n.x < 0) {
		    n.x = d.width-10*Math.random();
                                carpermin[0].carnum=carpermin[0].carnum+1;
		} else if (n.x > d.width) {
		    n.x = d.width-10*Math.random();
		}
                             if (n.x!=temp&&n.carWaiting==-1){
                                   carpermin[0].carwt+= System.currentTimeMillis()-
n.carWaiting;
                                   n.carWaiting=-1;
                             }
                            }
                      }
                    else{
                          temp=n.y;
	            n.y += Math.max(-10, Math.min(10, n.dy));
                          if ((n.y<brgtop&&n.y>brgbottom)&&brgflag[n.road-1]==1){
                             if(temp> brgtop ||temp<brgbottom)
                                n.y=temp;
                           }
                          else if ((n.y< brgtop &&n.y>brgbottom)&&brgflag[n.road-1]==0)
                                    if (lghtOrStp==0)
                                         brgflag[n.road-1]=1;
                                    else{
                                         if (light[n.road-1].signal==1)
                                             brgflag[n.road-1]=1;
                                         else
                                             n.y=temp;
                                      }
                          else if(temp< brgtop &&temp>brgbottom)
                             brgflag[n.road-1]=0;

		if (n.y > d.height||n.y<0) {
		    n.y = 10*Math.random();
                                  carpermin[0].carnum=carpermin[0].carnum+1;
		}
                      }
	}
	repaint();
    }

    Node pick;
    double pickoldx, pickoldy;
    Image offscreen;
    Dimension offscreensize;
    Graphics offgraphics;

    final Color selectColor = Color.pink;
    final Color edgeColor = Color.black;
    final Color nodeColor = new Color(250, 220, 100);

    public void paintNode(Graphics g, Node n) {
	int x = (int)n.x;
	int y = (int)n.y;
	g.setColor((n==pick) ? selectColor : nodeColor);
              int w= n.carW;
              int h=n.carL;
	g.fillRect(x - w/2, y - h / 2, w, h);
	g.setColor(Color.black);
	g.drawRect(x - w/2, y - h / 2, w-1, h-1);
              g.drawString(".", x-w/2+2, y+h/2-2);
    }

    public void paintRoad(Graphics g){
          Dimension d = size();
          g.setColor(Color.gray);
          for(int k=1; k<4; k++){
               g.drawLine(rdleft[k], 0, rdleft[k], rdbottom);
               g.drawLine(rdleft[k], rdtop, rdleft[k], d.height);
               g.drawLine(rdright[k], 0, rdright[k], rdbottom);
               g.drawLine(rdright[k], rdtop, rdright[k], d.height);
               g.drawLine(rdright[k-1], rdtop, rdleft[k], rdtop);
               g.drawLine(rdright[k-1], rdbottom, rdleft[k], rdbottom);
              }
          g.drawLine(rdright[3], rdbottom, d.width, rdbottom);
          g.drawLine(rdright[3], rdtop, d.width, rdtop);
    }

public void paintLghtPeriod(Graphics g){
     Font warnFont, dispFont, stopFont;
     warnFont=new Font("Arial", Font.BOLD, 20);
     dispFont=new Font("TimesRoman", 0, 12);
     stopFont=new Font("TimesRoman", Font.BOLD, 14);
     Dimension d = size();

     offgraphics.setColor(Color.black);
              if(lghtOrStp==1){
                 offgraphics.drawString("Traffic Light Period (1: red, 0: green)",  600,50);
                 offgraphics.setColor(Color.red);
                 offgraphics.drawString("red", 714, 50);
                 offgraphics.setColor(Color.green);
                 offgraphics.drawString("green", 747, 50);
                 offgraphics.setColor(Color.black);
                 for(int k=0; k<3; k++){
                   int tempred= light[k].redpauss/200, tempgreen= light[k].greenpauss/200;
                   int temp1=rdright[3]+170;
                   int temp2, temp3, temp4, temp5;
                   if (light[k].signal==0){
                        temp2=temp1+tempred;
                        temp3=30*(k+1)+40;
                        temp4= temp2+tempgreen;
                        temp5=temp3+12;
                   }
                  else{
                        temp2=temp1+tempgreen;
                        temp3=30*(k+1)+40+12;
                        temp4= temp2+tempred;
                        temp5=temp3-12;
                 }
                 offgraphics.drawString("Light " +Integer.toString(k+1), temp1-40, (temp5+temp3)/2+5);
                 while (temp1<d.width){
                     offgraphics.drawLine(temp1, temp3, temp2, temp3);
	       offgraphics.drawLine(temp2, temp5, temp4, temp5);
                     offgraphics.drawLine(temp1, temp3, temp1, temp5);
                     offgraphics.drawLine(temp2, temp3, temp2, temp5);
                     temp1=temp4;
                     temp2=temp1+tempred;
                     temp4=temp2+tempgreen;
                   }
                }
               offgraphics.setColor(Color.lightGray);
               offgraphics.fillRect(rdright[3]+328, 30, 15, 130);
               offgraphics.setColor(Color.gray);
               offgraphics.drawRect(rdright[3]+120, 20, 223, 145);
               offgraphics.setColor(Color.black);
               }
               else{
                 offgraphics.setFont(warnFont);
                 offgraphics.setColor(Color.white);
                 offgraphics.fillOval(rdleft[3]+175, rdtop-160, 70, 70);
                 offgraphics.setColor(Color.red);
                 offgraphics.fillOval(rdleft[3]+180, rdtop-155, 60, 60);
                 offgraphics.setColor(Color.white);
                 offgraphics.drawString("STOP", rdleft[3]+183, rdtop-116);
                 offgraphics.setColor(Color.black);
                 offgraphics.setFont(dispFont);
                 offgraphics.drawString("(California)", rdleft[3]+185, rdtop-50);
               }
}

public void paintLights(Graphics g){
        Font dispFont, stopFont;
        dispFont=new Font("TimesRoman", 0, 12);
        stopFont=new Font("TimesRoman", Font.BOLD, 14);

        g.setFont(dispFont);
        int lightwidth=15;
        for(int k=1; k<4; k++){
           if(lghtOrStp==0){
             g.setColor(Color.red);
             g.fillOval(rdleft[k]-18, rdtop+4, lightwidth, lightwidth);
             g.setColor(Color.white);
             g.setFont(stopFont);
             g.drawString("S", rdleft[k]-14, rdtop+16);
             g.setFont(dispFont);
           }
          else{
             g.setColor(Color.black);
             g.fillRect(rdleft[k]-18, rdtop+4, lightwidth-2, lightwidth-2);
             g.setColor(light[k-1].signal==1 ? Color.red : Color.green);
             g.fillOval(rdleft[k]-7, rdtop+6, 6, 9);
             g.setColor(light[k-1].signal==1 ? Color.green : Color.red);
             g.fillOval(rdleft[k]-16, rdtop+2, 9, 6);
             g.setColor(Color.black);

             g.drawString("Light "+k, rdleft[k]-58, rdtop+17);
           }
        }
}

public void paintAxies(Graphics g){
              int temp1=610;
              int temp2=350;
              int temp3=temp1+160;
              int temp4= temp2-80;
              offgraphics.setColor(Color.gray);
              offgraphics.drawRect(rdright[3]+120, temp4-35, 220, 130);
              offgraphics.setColor(Color.black);
              offgraphics.drawLine(temp1, temp2, temp3, temp2);
              offgraphics.drawLine(temp3, temp2, temp3-10, temp2-2);
              offgraphics.drawLine(temp3, temp2, temp3-10, temp2+2);
              offgraphics.drawLine(temp1, temp2, temp1, temp4);
              offgraphics.drawLine(temp1, temp4, temp1-2, temp4+10);
              offgraphics.drawLine(temp1, temp4, temp1+2, temp4+10);
              for (int k=1; k<4; k++){
                int grid=20*k;
                offgraphics.drawLine(temp1, temp2- grid, temp1+5, temp2- grid);
                offgraphics.drawString(k+".0", temp1- 20, temp2- grid+5);
               }
              offgraphics.drawString("Time", temp3-10, temp2-10);
              offgraphics.drawString("Traffic Flow ", temp1-20, temp2-95);
              offgraphics.drawString("  (cars/sec.)", temp1-20, temp2-82);

              for (int k=0; k<40; k++){
                 if (k>=carpermin[0].count){
                        temp3=1;
                        offgraphics.setColor(Color.gray);
                     }
                 else{
                        temp3=2;
                        offgraphics.setColor(Color.black);
                   }
                 offgraphics.drawRect(k*3+temp1, temp2 - (int)(carpermin[0].carflow[k]*20+1), temp3, temp3);
                 }
   }

    public synchronized void update(Graphics g) {

	Dimension d = size();
	if ((offscreen == null) || (d.width != offscreensize.width) || (d.height != offscreensize.height)) {
	    offscreen = createImage(d.width, d.height);
	    offscreensize = d;
	    offgraphics = offscreen.getGraphics();
	}

	offgraphics.setColor(getBackground());
	offgraphics.fillRect(0, 0, d.width, d.height);
              paintRoad(offgraphics);
//draw lights
              paintLights(offgraphics);
//draw light period
              paintLghtPeriod(offgraphics);
//draw axies for the flow chart
             paintAxies(offgraphics);
//draw cars
             for (int i = 0 ; i < nnodes ; i++) {
	    paintNode(offgraphics, nodes[i]);
	}
	g.drawImage(offscreen, 0, 0, null);
    }

    public synchronized boolean mouseDown(Event evt, int x, int y) {
	double bestdist = Double.MAX_VALUE;
	for (int i = 0 ; i < nnodes ; i++) {
	    Node n = nodes[i];
	    double dist = (n.x - x) * (n.x - x) + (n.y - y) * (n.y - y);
	    if (dist < bestdist) {
		pick = n;
                             pickoldx=n.x;
                             pickoldy=n.y;
		bestdist = dist;
	    }
	}
	pick.x = x;
	pick.y = y;
	repaint();
	return true;
    }

    public synchronized boolean mouseDrag(Event evt, int x, int y) {
	pick.x = x;
	pick.y = y;
	repaint();
	return true;
    }

    public synchronized boolean mouseUp(Event evt, int x, int y) {
               boolean insidelane;
	pick.x = x;
	pick.y = y;
               insidelane=false;
	for (int k=1; k<4; k++)
                 if (x>rdleft[k]&&x<rdright[k])
                 {
                      pick.road=k;
                      pick.x=xpos[k-1];
                      pick.carW= carwidth;
                      pick.carL= carlength;
                      insidelane=true;
                  }
                 if (!insidelane&&(y<rdtop&&y>rdbottom))
                  {
                      pick.road=0;
                      pick.y=ypos;
                      pick.carW= carlength;
                      pick.carL= carwidth;

                     }
                  else if(!insidelane)
                   {
                     pick.x=pickoldx;
                     pick.y=pickoldy;
                     }
	pick = null;

	repaint();
	return true;
    }

    public void start() {
	relaxer = new Thread(this);
	relaxer.start();
    }
    public void stop() {
	relaxer.stop();
    }
}

public class Graph extends Applet {
    GraphPanel panel;
    int carnum;
    Thread LightThrd[] = new Thread[3];
    public void init() {
	setLayout(new BorderLayout());

	panel = new GraphPanel(this);
	add("Center", panel);

              carnum = Integer.parseInt(getParameter("carnum"));
              carnum=Math.min(carnum, 70);
              for (int k=0; k<carnum; k++)
                 panel.findNode(Integer.toString(k));
              panel.lghtOrStp=1;
              for (int k=0; k<3; k++){
                LightThrd[k] = new Thread(panel.light[k]);
                panel.light[k].redpauss=(k+1)*1000+3000;
                panel.light[k].greenpauss=panel.light[k].redpauss;
                LightThrd[k].start();
              }
              panel.carpermin[0].time0 = System.currentTimeMillis();
              panel.carpermin[0].carnum=0;

             Panel btpnl=new Panel();
             add("South", btpnl);

             btpnl.add(new Button("Start"));
             btpnl.add(new Button("End"));

             btpnl.add(new Button("Stop Sign"));
             btpnl.add(new Button("Traffic Light"));
             btpnl.add(new Button("New Schedule for Lights"));
}

   public boolean action(Event evt, Object arg){
     if (((Button)evt.target).getLabel().equals("Traffic Light"))
       {
        if (panel.lghtOrStp==0){
          panel.lghtOrStp=1;
          for (int k=0; k<3; k++){
            LightThrd[k] = new Thread(panel.light[k]);
            panel.light[k].redpauss=(k+1)*1000+3000;
            panel.light[k].greenpauss=panel.light[k].redpauss;
            LightThrd[k].start();
            panel.carpermin[0].time0 = System.currentTimeMillis();
            panel.carpermin[0].carnum=0;
          }
         }
       }
     else if  (((Button)evt.target).getLabel().equals("Stop Sign"))
      {
         panel.lghtOrStp=0;
         for(int k=0; k<3; k++){
           if (LightThrd[k].isAlive())
              LightThrd[k].stop();
          }
         panel.carpermin[0].time0 = System.currentTimeMillis();
         panel.carpermin[0].carnum=0;
       }
      else if  (((Button)evt.target).getLabel().equals("End"))
      {
           for(int k=0; k<3; k++){
             if (LightThrd[k].isAlive())
               LightThrd[k].stop();
          }
           panel.stop();
        }
      else if  (((Button)evt.target).getLabel().equals("Start"))
      {
         if(panel.lghtOrStp==1)
           for(int k=0; k<3; k++){
            if (!LightThrd[k].isAlive()){
                 LightThrd[k] = new Thread(panel.light[k]);
                 LightThrd[k].start();
                }
          }
         if (!panel.relaxer.isAlive())
            panel.start();
        }
     else if  (((Button)evt.target).getLabel().equals("New Schedule for Lights"))
      {
         if (panel.lghtOrStp==1){
           for(int k=0; k<3; k++){
             if (LightThrd[k].isAlive()){
                panel.light[k].redpauss=(int)(Math.random()*6000)+3000;
                panel.light[k].greenpauss=(int)(Math.random()*6000)+3000;
               }
            }
           panel.carpermin[0].time0 = System.currentTimeMillis();
           panel.carpermin[0].carnum=0;
           panel.carpermin[0].carwt=0;

          }
        }
     return true;
    }
public void start() {
	panel.start();
}
    public void stop() {
	panel.stop();
    }
}

Like it said:
Recompile with -Xlint:deprecation for details.
then post the resulting details back here if you don't understand them.

I have compiled it.I have no problem for compiling this code .Good effort for programming.

Recompile with -Xlint:deprecation for details. all this means is that the code you compiled has an API which might change or be removed from the java sdk. for example type 'hide();' and if you are using netbeans a line will be shown through name of the API, and your compiler will give you the same error however all will run its just telling you that if you want you application to be really compatible you mustn't use that function because if a java update occurs that function could be taken out... nothing to worry about. the most likely cause in your code is the stop() function this is known in java to cause a whole lot of problems go google it

also, this is rather a 'remark' than an 'error', which is why the 'Tool completed successfully' :)

Leaving a deprecated method call really isn't a good idea. Here's what Oracle have to say about deprecated:

Valid reasons to deprecate an API include:
It is insecure, buggy, or highly inefficient
It is going away in a future release
It encourages bad coding practices

http://docs.oracle.com/javase/1.5.0/docs/guide/javadoc/deprecation/deprecation.html

So unless you're happy to use insecure, buggy, or highly inefficient code,replace your deprecated calls.

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